PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI02G06270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 256aa    MW: 28499.1 Da    PI: 4.7026
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI02G06270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.51.3e-55831871102
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql+ fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+df
  OMERI02G06270.1  83 QLREFWANQmeeIEQTADFKNHNLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDF 176
                      89******97777899****************************************************************************** PP

            NF-YC  92 lvdivprdelk 102
                      lvdivprde+k
  OMERI02G06270.1 177 LVDIVPRDEMK 187
                      ********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.56E-3363177IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.9E-3797169IPR009072Histone-fold
PfamPF008087.7E-21105168IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEPSSQPQPV MGVATGGSQA YPPPAAAYPP QAMVPGAPAV VLPGSQPSAP FPTNPAQLSA  60
QHQLVYQQAQ QFHQQLQQQQ QQQLREFWAN QMEEIEQTAD FKNHNLPLAR IKKIMKADED  120
VRMISAEAPV VFAKACEVFI LELTLRSWMH TEENKRRTLQ KNDIAAAITR TDIYDFLVDI  180
VPRDEMKEEG LGLPRVGLPP NVGGAADTYP YYYVPAQQGP GSGMMYGGQQ GHPVTYVWQQ  240
PQEQQEEAPE EQHSLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C1e-42731838119HapE
4g92_C1e-42731838119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880410.0AB288041.1 Oryza sativa Japonica Group OsHAP5A gene for HAP5 subunit of HAP complex, complete cds.
GenBankAK2434290.0AK243429.1 Oryza sativa Japonica Group cDNA, clone: J100067L16, full insert sequence.
GenBankAP0041130.0AP004113.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1116_A06.
GenBankAP0048360.0AP004836.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0030G02.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankHQ1626830.0HQ162683.1 Oryza sativa Japonica Group nuclear transcription factor Y subunit gamma mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627522.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_015627520.10.0PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG75e-73NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A0E0CGD60.0A0A0E0CGD6_9ORYZ; Uncharacterized protein
STRINGBGIOSGA007055-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os02g07450.10.0(Oryza sativa Japonica Group)
STRINGORGLA02G0049900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-73nuclear factor Y, subunit C2